Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
7
Hi-C
2
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
33
DNA binding
7
3D chromatin structure
5
DNA accessibility
Target of assay
33
transcription factor
5
RNA binding protein
2
chromatin remodeller
Date released
32
November, 2017
5
October, 2019
3
August, 2017
3
March, 2020
1
August, 2021
1
November, 2019
Available data
283
fastq
229
bam
179
bigWig
153
zippedFastqFolder
84
bed narrowPeak
39
tsv
38
bigBed narrowPeak
30
tagAlign
18
bed broadPeak
18
bigBed broadPeak
14
bed bed3+
10
bed bedMethyl
10
bedpe bed3+
10
bigBed bedMethyl
7
bed bedgraph
7
hic
5
bed bed3
4
hdf5
4
tar
4
txt
2
csv
2
ibed
1
vcf
Organism
45
Homo sapiens
Biosample type
34
cell line
tissue
6
in vitro differentiated cells
5
primary cell
Organ
33
liver
3
epithelium
2
blood vessel
2
connective tissue
2
vasculature
2
vein
1
pancreas
Project
45
AMP
Genome assembly (visualization)
477
hg19
GRCh38
Lab
44
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
audit script error
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
audit.ERROR.category!
audit script error
biosample_type!
tissue
BIOSAMPLE
ASSAY
45 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
ATAC-seq
DNase-seq
FAIRE-seq
cell line
HepG2
32
1
EndoC_BH1
1
in vitro differentiated cells
adipocyte
2
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
skeletal muscle myoblast
1
2
endothelial cell of umbilical vein
1
1
Download