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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
1
ATAC-seq
1
DNase-seq
Assay category
36
DNA binding
2
DNA accessibility
Target of assay
23
histone
23
histone modification
13
broad histone mark
13
transcription factor
10
narrow histone mark
2
RNA binding protein
Date released
22
August, 2017
15
November, 2017
1
March, 2019
Available data
425
bam
380
fastq
236
bigWig
190
tsv
184
bed narrowPeak
155
txt
153
zippedFastqFolder
152
tagAlign
43
bigBed narrowPeak
38
bed broadPeak
19
bed bedMethyl
19
bedpe bed3+
19
bigBed bedMethyl
17
hic
16
bigBed broadPeak
14
bed bed3+
10
bed bed3
7
bed bedgraph
4
hdf5
3
csv
3
tar
2
ibed
1
bedpe
1
vcf
Organism
38
Homo sapiens
Biosample type
22
tissue
14
cell line
2
primary cell
Organ
14
liver
13
musculature of body
7
pancreas
2
blood vessel
2
epithelium
2
vasculature
vein
1
adipose tissue
1
brain
1
connective tissue
Project
38
AMP
Genome assembly (visualization)
294
hg19
GRCh38
Lab
37
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
2
inconsistent control read length
assembly!
GRCh38
audit.ERROR.category!
audit script error
organ_slims!
stomach
vein
BIOSAMPLE
ASSAY
38 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
1
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
cell line
HepG2
14
primary cell
skeletal muscle myoblast
1
1
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