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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
3
ATAC-seq
1
MPRA
Assay category
10
Transcription
3
DNA accessibility
Date released
February, 2021
August, 2021
7
February, 2023
6
May, 2022
1
October, 2022
Available data
421
bam
362
fastq
223
bigWig
169
bed narrowPeak
153
zippedFastqFolder
141
tagAlign
74
tsv
44
bigBed narrowPeak
40
bed broadPeak
19
bed bedMethyl
19
bigBed bedMethyl
18
bedpe bed3+
18
bigBed broadPeak
16
hic
14
txt
10
bed bed3
10
bed bed3+
4
hdf5
4
tar
3
bed bedgraph
2
csv
2
ibed
1
bedpe
Organism
13
Homo sapiens
Biosample type
10
tissue
3
in vitro differentiated cells
1
cell line
Organ
6
pancreas
4
bone element
4
skeleton
Project
14
AMP
Genome assembly (visualization)
3
hg19
Lab
6
Kyle Gaulton, UCSD
5
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
audit script error
1
inconsistent ontology term
assembly!
GRCh38
audit.ERROR.category!
audit script error
month_released!
August, 2021
February, 2021
BIOSAMPLE
ASSAY
14 results
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total RNA-seq
ATAC-seq
MPRA
tissue
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
pubis
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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