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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
8
single cell RNA-seq
3
ATAC-seq
1
MPRA
Assay category
67
Transcription
3
DNA accessibility
Date released
84
February, 2021
57
August, 2021
7
February, 2023
6
May, 2022
1
October, 2022
Available data
405
bam
372
fastq
238
bigWig
184
bed narrowPeak
155
txt
153
zippedFastqFolder
150
tagAlign
92
tsv
44
bigBed narrowPeak
40
bed broadPeak
18
bigBed broadPeak
17
bed bedMethyl
17
bedpe bed3+
17
bigBed bedMethyl
15
hic
14
bed bed3+
10
bed bed3
7
bed bedgraph
4
hdf5
4
tar
3
csv
2
ibed
1
bedpe
1
vcf
Organism
154
Homo sapiens
Biosample type
151
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
57
kidney
6
pancreas
4
skeleton
Project
155
AMP
Genome assembly (visualization)
3
hg19
Lab
89
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
audit script error
assembly!
GRCh38
audit.ERROR.category!
audit script error
organ_slims!
heart
spleen
BIOSAMPLE
ASSAY
155 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
tissue
bone element
84
kidney
49
8
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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