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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
59
total RNA-seq
27
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
2
ATAC-seq
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
27
DNA binding
8
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
11
transcription factor
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
214
August, 2021
199
May, 2022
170
February, 2023
162
August, 2017
134
May, 2020
126
November, 2017
123
May, 2021
115
February, 2021
106
October, 2019
56
September, 2020
48
March, 2020
47
September, 2023
29
July, 2019
29
October, 2018
25
February, 2020
24
May, 2019
19
April, 2020
17
December, 2017
16
April, 2019
16
January, 2021
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
4
January, 2019
4
July, 2018
4
March, 2023
November, 2019
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
December, 2019
1
October, 2022
1
September, 2018
Available data
108
tsv
57
txt
16
bed narrowPeak
16
bigWig
8
bam
8
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
213
Homo sapiens
Biosample type
165
tissue
36
cell line
12
in vitro differentiated cells
1
primary cell
Organ
92
heart
66
kidney
32
liver
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
3
epithelium
2
artery
1
adipose tissue
Project
214
AMP
Genome assembly (visualization)
GRCh38
60
hg19
Lab
110
AMP-T2D consortium
64
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assembly!
GRCh38
audit.ERROR.category!
audit script error
month_released!
November, 2019
BIOSAMPLE
ASSAY
214 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
ATAC-seq
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
8
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
1
See all biosamples
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