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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
33
single cell RNA-seq
27
snATAC-seq
6
WGBS
3
Hi-C
Assay category
125
Transcription
27
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Date released
76
February, 2023
45
February, 2021
37
September, 2020
3
October, 2022
Available data
159
fastq
zippedFastqFolder
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
161
Homo sapiens
Biosample type
161
primary cell
Organ
62
epithelium
62
pancreas
Project
1206
AMP
161
HPAP
57
T1D
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
GRCh38
3
hg19
Lab
161
Klaus Kaestner, Upenn
Audit category:
30
audit script error
assembly!
GRCh38
audit.ERROR.category!
inconsistent ontology term
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
161 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
33
27
pancreatic alpha cell
42
6
1
exocrine cell
39
pancreatic beta cell
11
1
pancreatic acinar cell
1
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