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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
67
ChIP-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
9
Hi-C
8
RRBS
4
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
202
DNA accessibility
184
Transcription
67
DNA binding
56
DNA methylation
9
3D chromatin structure
Target of assay
39
histone
39
histone modification
27
control
26
broad histone mark
13
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
134
May, 2022
98
May, 2020
82
February, 2023
56
May, 2021
56
September, 2020
46
February, 2021
17
August, 2017
12
October, 2019
11
July, 2019
8
January, 2021
4
June, 2019
3
November, 2017
3
October, 2022
1
August, 2021
1
March, 2020
1
November, 2018
1
September, 2018
Available data
180
fastq
153
zippedFastqFolder
90
bigWig
75
bam
34
bed narrowPeak
12
tsv
8
bed bedMethyl
8
bigBed bedMethyl
7
bed bed3+
5
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
3
cool
2
csv
2
tagAlign
1
tar
Organism
534
Homo sapiens
Biosample type
798
tissue
534
primary cell
163
cell line
113
in vitro differentiated cells
6
stem cell
Organ
178
epithelium
154
pancreas
15
vasculature
13
blood vessel
10
vein
8
blood
8
bodily fluid
7
brain
5
kidney
4
connective tissue
3
liver
2
eye
2
musculature of body
1
bone element
1
bone marrow
1
heart
Project
314
HPAP
197
AMP
23
T1D
Genome assembly (visualization)
542
hg19
GRCh38
Lab
314
Klaus Kaestner, Upenn
162
AMP-T2D consortium
58
Kyle Gaulton, UCSD
Audit category:
31
audit script error
inconsistent ontology term
assembly!
GRCh38
audit.ERROR.category!
inconsistent ontology term
month_released!
July, 2018
October, 2018
BIOSAMPLE
ASSAY
534 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
6
31
1
pancreatic beta cell
13
11
6
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
2
33
1
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