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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
49
total RNA-seq
7
ChIP-seq
6
snATAC-seq
3
RRBS
3
snDrop-seq
2
DNase-seq
2
RNA microarray
2
STARR-seq
1
FAIRE-seq
1
Hi-C
Assay category
113
Transcription
9
DNA accessibility
7
DNA binding
3
DNA methylation
1
3D chromatin structure
Target of assay
7
control
1
RNA binding protein
transcription factor
Date released
66
August, 2021
47
September, 2023
8
February, 2021
5
October, 2019
4
April, 2019
4
July, 2019
3
December, 2019
3
May, 2023
Available data
62
txt
10
tsv
8
bam
5
csv
3
bed bedMethyl
3
bigBed bedMethyl
1
bed narrowPeak
1
bigBed narrowPeak
1
bigWig
1
hic
Organism
140
Homo sapiens
Biosample type
133
tissue
5
primary cell
2
cell line
Organ
267
pancreas
191
epithelium
175
liver
140
kidney
124
heart
66
connective tissue
53
eye
49
brain
40
vasculature
38
blood vessel
36
adipose tissue
24
limb
22
musculature of body
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
bone element
9
spleen
8
skeleton
5
embryo
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
93
AMP
47
KPMP
Genome assembly (visualization)
GRCh38
85
hg19
Lab
67
Katalin Susztak, Upenn
47
KPMP
24
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
inconsistent ontology term
7
audit script error
assembly!
GRCh38
audit.ERROR.category!
inconsistent ontology term
target.investigated_as!
histone
transcription factor
BIOSAMPLE
ASSAY
140 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
DNase-seq
RNA microarray
STARR-seq
FAIRE-seq
Hi-C
tissue
kidney
64
49
6
6
1
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
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primary cell
epithelial cell of proximal tubule
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
renal cortical epithelial cell
1
cell line
HEK293T
2
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