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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ChIP-seq
Assay category
111
DNA binding
Target of assay
71
control
40
transcription factor
15
histone
histone modification
10
narrow histone mark
6
RNA binding protein
5
broad histone mark
2
chromatin remodeller
Date released
210
August, 2021
200
May, 2022
170
February, 2023
147
February, 2021
126
May, 2020
111
November, 2017
69
May, 2021
66
August, 2017
64
October, 2019
56
September, 2020
48
March, 2020
47
September, 2023
29
October, 2018
25
July, 2019
22
February, 2020
22
May, 2019
19
April, 2020
16
December, 2017
16
January, 2021
15
April, 2019
10
November, 2020
9
November, 2018
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
3
October, 2017
1
August, 2018
1
August, 2022
1
September, 2018
Available data
110
bam
99
fastq
52
bigWig
32
bed narrowPeak
32
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
11
tagAlign
3
tar
Organism
111
Homo sapiens
Biosample type
96
cell line
12
tissue
3
primary cell
Organ
96
liver
15
brain
2
epithelium
2
vasculature
1
blood vessel
Project
111
AMP
Genome assembly (visualization)
257
hg19
GRCh38
Lab
111
AMP-T2D consortium
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
audit.ERROR.category!
inconsistent replicate
organ_slims!
limb
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
111 results
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Clear Filters
ChIP-seq
cell line
HepG2
96
tissue
layer of hippocampus
3
caudate nucleus
2
cingulate gyrus
2
middle frontal area 46
2
substantia nigra
2
+ See 1 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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