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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
25
ATAC-seq
9
total RNA-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
77
DNA binding
25
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
32
control
19
broad histone mark
14
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
48
May, 2021
19
August, 2017
16
February, 2023
12
August, 2021
8
February, 2018
6
March, 2020
4
December, 2017
4
February, 2021
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
25
bam
22
fastq
22
tagAlign
16
bigWig
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
5
bed bed3
4
bed narrowPeak
4
hic
4
tsv
3
txt
2
bigBed narrowPeak
2
ibed
Organism
128
Homo sapiens
Biosample type
915
tissue
552
primary cell
190
cell line
128
in vitro differentiated cells
7
stem cell
Organ
43
connective tissue
7
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
128
AMP
Genome assembly (visualization)
292
hg19
GRCh38
4
hg18
Lab
74
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
16
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
assembly!
GRCh38
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
large intestine
urinary bladder
BIOSAMPLE
ASSAY
128 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
38
6
5
1
adipocyte
19
8
1
1
neural progenitor cell
8
cardiomyocytes (cardiac muscle cell)
2
2
2
chondrocyte
5
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