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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ATAC-seq
42
ChIP-seq
5
FAIRE-seq
2
DNase-seq
Assay category
59
DNA accessibility
42
DNA binding
Target of assay
37
transcription factor
5
RNA binding protein
5
histone
5
histone modification
4
narrow histone mark
1
broad histone mark
Date released
30
February, 2023
25
November, 2017
20
May, 2022
16
August, 2021
4
August, 2017
2
July, 2019
1
April, 2019
1
May, 2019
1
November, 2018
1
October, 2019
Available data
400
bam
373
fastq
200
tsv
192
bigWig
155
txt
153
zippedFastqFolder
tagAlign
130
bed narrowPeak
40
bed broadPeak
37
bigBed narrowPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
13
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
101
Homo sapiens
Biosample type
54
tissue
39
cell line
4
in vitro differentiated cells
4
primary cell
Organ
59
liver
27
eye
13
epithelium
3
connective tissue
2
pancreas
1
adipose tissue
1
blood vessel
1
brain
1
heart
1
kidney
1
limb
1
musculature of body
1
vasculature
1
vein
Project
101
AMP
Genome assembly (visualization)
GRCh38
1271
hg19
Lab
63
AMP-T2D consortium
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
1
inconsistent control read length
assembly!
GRCh38
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
tagAlign
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
101 results
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ATAC-seq
ChIP-seq
FAIRE-seq
DNase-seq
tissue
liver
20
retina
15
pigmented layer of retina
12
adipose tissue
1
frontal cortex
1
+ See 5 more…
cell line
HepG2
39
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
primary cell
skeletal muscle myoblast
1
2
endothelial cell of umbilical vein
1
See all biosamples
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