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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
20
ATAC-seq
Assay category
39
DNA binding
20
DNA accessibility
Target of assay
36
transcription factor
4
RNA binding protein
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
25
November, 2017
20
May, 2022
14
August, 2021
Available data
142
bam
114
fastq
87
bigWig
67
bed narrowPeak
tagAlign
25
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tsv
3
tar
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
1
hdf5
1
vcf
Organism
59
Homo sapiens
Biosample type
39
cell line
20
tissue
Organ
59
liver
27
eye
20
pancreas
13
epithelium
3
connective tissue
1
adipose tissue
1
blood vessel
1
brain
1
heart
1
kidney
1
limb
1
musculature of body
1
vasculature
1
vein
Project
59
AMP
Genome assembly (visualization)
386
hg19
GRCh38
Lab
25
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
missing controlled_by
Audit category:
1
inconsistent control read length
assembly!
GRCh38
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
ATAC-seq
cell line
HepG2
39
tissue
liver
20
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