Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
5
FAIRE-seq
4
ATAC-seq
2
DNase-seq
Assay category
63
DNA binding
11
DNA accessibility
Target of assay
37
transcription factor
26
histone
26
histone modification
15
broad histone mark
11
narrow histone mark
5
RNA binding protein
2
chromatin remodeller
Date released
39
November, 2017
24
August, 2017
6
October, 2019
2
July, 2019
1
March, 2019
1
May, 2019
1
November, 2018
Available data
433
bam
407
fastq
239
bigWig
200
tsv
185
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
74
Homo sapiens
Biosample type
38
cell line
28
tissue
6
primary cell
2
in vitro differentiated cells
Organ
38
liver
14
musculature of body
9
pancreas
4
connective tissue
3
blood vessel
3
epithelium
3
vasculature
3
vein
2
adipose tissue
2
brain
1
kidney
1
limb
Project
74
AMP
Genome assembly (visualization)
GRCh38
990
hg19
Lab
73
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
7
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
74 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
FAIRE-seq
ATAC-seq
DNase-seq
cell line
HepG2
38
tissue
skeletal muscle tissue
13
islet of Langerhans
6
1
1
adipose tissue
1
cingulate gyrus
1
frontal cortex
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
1
skeletal muscle myoblast
1
2
in vitro differentiated cells
adipocyte
2
See all biosamples
Download