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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
173
single cell RNA-seq
122
total RNA-seq
87
RNA microarray
58
ATAC-seq
26
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
317
DNA binding
295
Transcription
89
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
184
control
134
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
165
August, 2021
126
August, 2017
93
February, 2021
81
October, 2019
66
May, 2022
February, 2023
47
September, 2023
31
March, 2020
31
May, 2020
29
October, 2018
25
February, 2020
25
November, 2017
23
May, 2019
19
April, 2020
16
April, 2019
16
July, 2019
12
December, 2017
9
October, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
2
January, 2018
2
May, 2021
1
August, 2022
1
January, 2019
1
November, 2019
Available data
204
bam
155
tsv
153
txt
122
tagAlign
97
fastq
73
bed narrowPeak
60
bigWig
22
bed broadPeak
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
bigBed narrowPeak
6
csv
1
bed bed3+
1
bedpe
Organism
855
Homo sapiens
Biosample type
858
tissue
464
primary cell
188
cell line
113
in vitro differentiated cells
7
stem cell
Organ
134
kidney
123
liver
121
heart
101
pancreas
84
bone element
66
connective tissue
65
adipose tissue
61
brain
40
musculature of body
28
blood vessel
28
vasculature
26
limb
22
eye
20
lung
12
nerve
11
artery
9
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
781
AMP
47
KPMP
19
LungMap
11
T1D
Genome assembly (visualization)
GRCh38
1713
hg19
Lab
642
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
audit.WARNING.category!
inconsistent control read length
month_released!
February, 2023
target.investigated_as!
other context
BIOSAMPLE
ASSAY
858 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
64
49
6
1
1
1
islet of Langerhans
46
27
35
5
4
3
1
1
4
liver
70
1
20
20
1
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
36
3
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