Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
WGBS
2
total RNA-seq
1
ATAC-seq
1
RNA microarray
Assay category
6
DNA methylation
2
Transcription
1
DNA accessibility
Date released
6
February, 2021
2
February, 2023
1
December, 2019
1
March, 2020
Available data
80
zippedFastqFolder
76
fastq
33
bam
13
bed narrowPeak
10
tsv
9
bigWig
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
bed bed3+
2
bed broadPeak
bigBed broadPeak
2
hdf5
2
tagAlign
1
bigBed narrowPeak
1
tar
Organism
10
Homo sapiens
Biosample type
6
primary cell
3
tissue
1
cell line
Organ
98
heart
14
brain
12
kidney
12
liver
11
pancreas
10
blood vessel
10
epithelium
10
vasculature
5
eye
4
artery
4
connective tissue
3
adipose tissue
3
limb
3
musculature of body
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
6
HPAP
4
AMP
Genome assembly (visualization)
147
hg19
GRCh38
Lab
6
Klaus Kaestner, Upenn
4
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assembly!
GRCh38
audit.WARNING.category!
inconsistent control read length
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
10 results
search-icon
table-tab-icon
Clear Filters
WGBS
total RNA-seq
ATAC-seq
RNA microarray
primary cell
pancreatic alpha cell
6
tissue
pigmented layer of retina
2
renal glomerulus
1
cell line
EndoC_BH1
1
Download