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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
4
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
75
DNA binding
7
DNA accessibility
Target of assay
42
transcription factor
33
histone
33
histone modification
21
broad histone mark
12
narrow histone mark
5
RNA binding protein
Date released
30
May, 2021
30
November, 2017
16
August, 2021
3
August, 2017
2
February, 2023
1
October, 2019
Available data
308
fastq
227
bam
177
bigWig
153
zippedFastqFolder
82
bed narrowPeak
41
tsv
36
bigBed narrowPeak
30
tagAlign
18
bed broadPeak
18
bigBed broadPeak
bed bed3+
13
bedpe bed3+
11
hic
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bedgraph
5
bed bed3
4
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
82
Homo sapiens
Biosample type
tissue
44
cell line
34
primary cell
4
in vitro differentiated cells
Organ
44
liver
2
connective tissue
1
blood vessel
1
epithelium
1
vasculature
1
vein
Project
82
AMP
Genome assembly (visualization)
772
hg19
GRCh38
Lab
34
AMP-T2D consortium
30
Kyle Gaulton, UCSD
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
2
inconsistent control read length
inconsistent control run_type
assembly!
GRCh38
audit.WARNING.category!
inconsistent control run_type
biosample_type!
tissue
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
82 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
cell line
HepG2
44
primary cell
CD8-positive, alpha-beta T cell
30
skeletal muscle myoblast
1
2
endothelial cell of umbilical vein
1
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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