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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
total RNA-seq
47
WGBS
39
ATAC-seq
12
ChIP-seq
3
Hi-C
Assay category
53
Transcription
47
DNA methylation
39
DNA accessibility
12
DNA binding
3
3D chromatin structure
Target of assay
12
control
Date released
80
May, 2022
37
February, 2023
16
September, 2020
12
August, 2017
6
February, 2021
3
October, 2022
Available data
80
zippedFastqFolder
71
fastq
12
bam
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
154
Homo sapiens
Biosample type
154
primary cell
119
tissue
37
cell line
1
in vitro differentiated cells
Organ
181
epithelium
154
pancreas
15
vasculature
13
blood vessel
10
vein
8
blood
8
bodily fluid
8
kidney
7
brain
7
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
Project
142
HPAP
12
AMP
Genome assembly (visualization)
GRCh38
185
hg19
Lab
142
Klaus Kaestner, Upenn
12
AMP-T2D consortium
Audit category:
3
audit script error
assembly!
GRCh38
audit.WARNING.category!
inconsistent control run_type
month_released!
April, 2019
BIOSAMPLE
ASSAY
154 results
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total RNA-seq
WGBS
ATAC-seq
ChIP-seq
Hi-C
primary cell
pancreatic alpha cell
42
31
22
6
1
pancreatic beta cell
11
16
13
6
1
pancreatic acinar cell
4
1
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