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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
33
ChIP-seq
17
pCHi-C
10
RRBS
9
Hi-C
4
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
212
DNA accessibility
184
Transcription
58
DNA methylation
33
DNA binding
9
3D chromatin structure
Target of assay
histone
39
histone modification
32
control
26
broad histone mark
13
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
134
May, 2022
102
May, 2020
88
February, 2023
56
September, 2020
46
February, 2021
23
May, 2021
17
August, 2017
13
July, 2019
8
January, 2021
8
June, 2019
7
October, 2019
3
November, 2017
3
October, 2022
1
August, 2021
1
March, 2020
1
May, 2019
1
November, 2018
1
September, 2018
Available data
180
fastq
153
zippedFastqFolder
79
bam
62
bigWig
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
5
hic
4
bed narrowPeak
4
bedpe bed3+
4
bigBed narrowPeak
4
hdf5
3
cool
2
bed broadPeak
2
bigBed broadPeak
2
csv
2
tagAlign
1
tar
Organism
513
Homo sapiens
Biosample type
784
tissue
513
primary cell
190
cell line
87
in vitro differentiated cells
7
stem cell
Organ
176
epithelium
154
pancreas
10
vasculature
8
blood
8
blood vessel
8
bodily fluid
8
kidney
7
brain
7
connective tissue
5
vein
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
Project
314
HPAP
175
AMP
24
T1D
Genome assembly (visualization)
398
hg19
GRCh38
Lab
314
Klaus Kaestner, Upenn
170
AMP-T2D consortium
29
Kyle Gaulton, UCSD
Audit category:
31
audit script error
18
inconsistent ontology term
assembly!
GRCh38
audit.WARNING.category!
inconsistent control run_type
month_released!
February, 2018
target.investigated_as!
histone
BIOSAMPLE
ASSAY
513 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
31
6
1
pancreatic beta cell
13
11
16
6
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
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