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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
1
ATAC-seq
1
DNase-seq
Assay category
37
DNA binding
2
DNA accessibility
Target of assay
24
histone
24
histone modification
15
broad histone mark
13
transcription factor
9
narrow histone mark
2
RNA binding protein
Date released
22
August, 2017
14
November, 2017
2
October, 2019
1
March, 2019
Available data
399
fastq
389
bam
228
bigWig
180
bed narrowPeak
174
tsv
153
zippedFastqFolder
116
tagAlign
99
txt
40
bigBed narrowPeak
39
bed broadPeak
23
bedpe bed3+
21
hic
18
bigBed broadPeak
13
bed bedMethyl
13
bigBed bedMethyl
12
bed bed3+
9
bed bed3
7
bed bedgraph
4
tar
3
cool
3
csv
2
ibed
1
bedpe
1
hdf5
1
vcf
Organism
39
Homo sapiens
Biosample type
21
tissue
14
cell line
4
primary cell
Organ
14
liver
13
musculature of body
7
pancreas
2
blood vessel
2
epithelium
2
vasculature
2
vein
1
adipose tissue
brain
1
connective tissue
Project
39
AMP
Genome assembly (visualization)
190
hg19
GRCh38
Lab
38
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
2
inconsistent control read length
assembly!
GRCh38
audit.WARNING.category!
inconsistent control run_type
organ_slims!
brain
kidney
BIOSAMPLE
ASSAY
39 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
1
subcutaneous abdominal adipose tissue
1
cell line
HepG2
14
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
1
1
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