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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
Assay category
64
DNA binding
Target of assay
297
control
169
histone
169
histone modification
88
narrow histone mark
81
broad histone mark
64
transcription factor
13
RNA binding protein
5
nucleotide modification
1
recombinant protein
Date released
38
November, 2017
12
May, 2021
11
August, 2021
1
April, 2019
1
August, 2017
1
November, 2018
Available data
46
bigWig
42
bed narrowPeak
40
bam
40
fastq
31
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
3
tar
Organism
64
Homo sapiens
Biosample type
50
cell line
12
in vitro differentiated cells
1
primary cell
1
tissue
Organ
50
liver
1
kidney
Project
64
AMP
Genome assembly (visualization)
439
hg19
GRCh38
Lab
41
AMP-T2D consortium
12
Kyle Gaulton, UCSD
11
Bing Ren, UCSD
Audit category:
6
missing controlled_by
Audit category:
2
inconsistent control read length
inconsistent control run_type
assembly!
GRCh38
audit.WARNING.category!
inconsistent control run_type
organ_slims!
connective tissue
urinary bladder
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
cell line
HepG2
50
in vitro differentiated cells
embryonic stem cell
12
primary cell
skeletal muscle myoblast
1
tissue
kidney
1
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