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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
single cell RNA-seq
28
snATAC-seq
11
ATAC-seq
7
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
67
Transcription
39
DNA accessibility
Date released
47
September, 2023
23
February, 2023
19
April, 2020
May, 2021
16
January, 2021
4
March, 2023
2
March, 2020
Organism
106
Homo sapiens
Biosample type
94
tissue
8
primary cell
7
cell line
2
stem cell
Organ
47
kidney
28
pancreas
19
lung
8
blood
8
bodily fluid
Project
AMP
HPAP
47
KPMP
41
T1D
19
LungMap
4
community
Genome assembly (visualization)
GRCh38
50
hg19
Lab
47
KPMP
39
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
assembly!
GRCh38
award.project!
AMP
HPAP
files.file_type!
ibed
month_released!
May, 2021
BIOSAMPLE
ASSAY
111 results
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single cell RNA-seq
snATAC-seq
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
47
islet of Langerhans
6
11
7
lung
9
10
pancreas
4
primary cell
peripheral blood mononuclear cell
8
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1