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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
8
single cell RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
38
DNA binding
8
Transcription
2
DNA accessibility
Target of assay
25
histone
25
histone modification
15
broad histone mark
13
transcription factor
10
narrow histone mark
2
RNA binding protein
Date released
22
August, 2017
15
November, 2017
6
February, 2021
2
October, 2019
1
March, 2019
1
November, 2018
1
September, 2018
Available data
433
bam
247
fastq
239
bigWig
194
tsv
185
bed narrowPeak
161
txt
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
19
bed bedMethyl
19
bedpe bed3+
19
bigBed bedMethyl
19
hic
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
bedpe
1
vcf
Organism
48
Homo sapiens
Biosample type
28
tissue
14
cell line
6
primary cell
Organ
15
liver
13
musculature of body
7
pancreas
5
kidney
2
blood vessel
2
epithelium
2
vasculature
2
vein
1
adipose tissue
1
brain
1
connective tissue
Project
48
AMP
Genome assembly (visualization)
298
hg19
GRCh38
Lab
47
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
5
audit script error
Audit category:
2
inconsistent control read length
assembly!
GRCh38
award.project!
HPAP
month_released!
August, 2018
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
1
kidney
5
cingulate gyrus
1
liver
1
+ See 1 more…
cell line
HepG2
14
primary cell
endothelial cell of umbilical vein
2
pancreatic cell
2
skeletal muscle myoblast
1
1
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