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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
127
single cell RNA-seq
115
total RNA-seq
87
RNA microarray
66
ATAC-seq
24
pCHi-C
17
snATAC-seq
12
Hi-C
11
WGBS
9
RRBS
3
snDrop-seq
2
FAIRE-seq
1
DNase-seq
Assay category
242
Transcription
158
DNA binding
86
DNA accessibility
20
DNA methylation
12
3D chromatin structure
Target of assay
157
control
120
histone
histone modification
67
narrow histone mark
53
broad histone mark
1
RNA binding protein
1
transcription factor
Date released
163
August, 2021
93
February, 2021
57
October, 2019
42
February, 2023
42
May, 2022
32
August, 2017
25
March, 2020
24
February, 2020
23
May, 2020
21
May, 2019
19
April, 2020
18
October, 2018
15
April, 2019
14
July, 2019
12
December, 2017
12
November, 2017
4
December, 2018
3
December, 2019
3
May, 2023
3
November, 2018
3
October, 2017
2
January, 2018
1
January, 2019
1
May, 2021
Available data
155
tsv
151
txt
149
bam
53
fastq
50
bed narrowPeak
50
tagAlign
25
bigWig
8
hic
7
bed bedMethyl
7
bedpe bed3+
7
bigBed bedMethyl
6
csv
5
bed bed3
3
bigBed narrowPeak
1
bed bed3+
Organism
630
Homo sapiens
Biosample type
632
tissue
359
primary cell
156
cell line
94
in vitro differentiated cells
7
stem cell
Organ
121
heart
pancreas
95
liver
92
bone element
87
kidney
51
eye
43
brain
35
adipose tissue
35
connective tissue
28
blood vessel
28
vasculature
24
limb
20
lung
20
musculature of body
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
612
AMP
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
GRCh38
969
hg19
Lab
505
AMP-T2D consortium
67
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
87
inconsistent ontology term
8
audit script error
assembly!
GRCh38
award.project!
KPMP
organ_slims!
pancreas
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
632 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
ATAC-seq
pCHi-C
snATAC-seq
Hi-C
WGBS
RRBS
snDrop-seq
FAIRE-seq
DNase-seq
tissue
liver
42
1
20
20
1
1
3
1
bone element
84
kidney
7
17
49
6
1
1
1
heart left ventricle
6
18
1
1
2
1
islet of Langerhans
14
10
4
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