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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
Hi-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
4
3D chromatin structure
2
Transcription
1
DNA accessibility
Date released
4
July, 2019
2
February, 2021
2
May, 2021
1
May, 2022
Available data
407
bam
384
fastq
223
bigWig
196
tsv
181
bed narrowPeak
158
txt
153
zippedFastqFolder
130
tagAlign
42
bigBed narrowPeak
40
bed broadPeak
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
18
hic
16
bedpe bed3+
9
bed bed3+
8
csv
5
bed bed3
4
hdf5
4
tar
3
cool
1
bedpe
vcf
Organism
9
Homo sapiens
Biosample type
7
primary cell
in vitro differentiated cells
1
cell line
1
tissue
Organ
3
brain
2
blood vessel
2
connective tissue
2
epithelium
2
liver
2
vasculature
1
musculature of body
Project
9
AMP
Genome assembly (visualization)
GRCh38
225
hg19
Lab
7
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
1
audit script error
assembly!
GRCh38
award.project!
LungMap
biosample_type!
in vitro differentiated cells
files.file_type!
vcf
BIOSAMPLE
ASSAY
9 results
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Hi-C
pCHi-C
total RNA-seq
snATAC-seq
primary cell
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
+ See 1 more…
cell line
HepG2
1
tissue
skeletal muscle tissue
1
See all biosamples
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