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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
270
ChIP-seq
168
single cell RNA-seq
125
total RNA-seq
87
RNA microarray
25
ATAC-seq
23
pCHi-C
18
snATAC-seq
15
Hi-C
11
RRBS
10
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
293
Transcription
270
DNA binding
44
DNA accessibility
21
DNA methylation
15
3D chromatin structure
Target of assay
168
control
103
histone
103
histone modification
54
narrow histone mark
49
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
159
August, 2021
105
August, 2017
93
February, 2021
76
October, 2019
47
September, 2023
29
October, 2018
28
May, 2022
27
March, 2020
24
November, 2017
23
May, 2020
22
February, 2020
19
April, 2020
15
April, 2019
14
February, 2023
13
July, 2019
12
December, 2017
11
May, 2019
9
October, 2017
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
3
November, 2018
2
January, 2018
1
August, 2022
1
January, 2019
1
May, 2021
1
November, 2019
Available data
187
bam
157
txt
149
tsv
122
tagAlign
bed narrowPeak
97
fastq
60
bigWig
22
bed broadPeak
10
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
6
bigBed narrowPeak
6
csv
5
bed bed3
1
bed bed3+
1
bedpe
Organism
757
Homo sapiens
Biosample type
760
tissue
480
primary cell
145
cell line
125
in vitro differentiated cells
7
stem cell
Organ
133
kidney
121
heart
95
liver
92
bone element
65
connective tissue
65
pancreas
64
adipose tissue
60
brain
28
blood vessel
vasculature
26
eye
26
musculature of body
25
limb
20
lung
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
694
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
973
hg19
GRCh38
Lab
591
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
7
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
award.project!
T1D
files.file_type!
bed narrowPeak
organ_slims!
vasculature
BIOSAMPLE
ASSAY
760 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
ATAC-seq
pCHi-C
snATAC-seq
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
64
49
6
1
1
islet of Langerhans
40
25
17
4
1
3
1
4
liver
62
1
20
1
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
35
3
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