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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
1
ATAC-seq
1
DNase-seq
Assay category
36
DNA binding
2
DNA accessibility
Target of assay
23
histone
23
histone modification
13
broad histone mark
13
transcription factor
10
narrow histone mark
2
RNA binding protein
Date released
22
August, 2017
15
November, 2017
1
March, 2019
Available data
400
bam
231
fastq
230
bigWig
190
tsv
172
bed narrowPeak
161
txt
150
tagAlign
43
bigBed narrowPeak
38
bed broadPeak
18
bedpe bed3+
16
bigBed broadPeak
16
hic
13
bed bed3+
13
bed bedMethyl
13
bigBed bedMethyl
10
bed bed3
8
csv
7
bed bedgraph
3
tar
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
38
Homo sapiens
Biosample type
22
tissue
14
cell line
2
primary cell
Organ
14
liver
13
musculature of body
7
pancreas
2
blood vessel
epithelium
2
vasculature
2
vein
1
adipose tissue
1
brain
1
connective tissue
Project
38
AMP
Genome assembly (visualization)
282
hg19
GRCh38
Lab
37
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
2
inconsistent control read length
assembly!
GRCh38
award.project!
community
lab.title!
Klaus Kaestner, Upenn
organ_slims!
epithelium
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
ATAC-seq
DNase-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
1
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
cell line
HepG2
14
primary cell
skeletal muscle myoblast
1
1
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