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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ATAC-seq
72
ChIP-seq
10
RRBS
5
total RNA-seq
4
DNase-seq
2
Hi-C
2
single cell RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
117
DNA accessibility
72
DNA binding
11
DNA methylation
7
Transcription
2
3D chromatin structure
Target of assay
39
histone
39
histone modification
32
control
26
broad histone mark
13
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
102
May, 2020
41
May, 2021
17
August, 2017
12
February, 2023
12
October, 2019
9
July, 2019
8
June, 2019
3
November, 2017
1
August, 2021
1
February, 2021
1
March, 2020
1
May, 2019
1
November, 2018
1
September, 2018
Available data
94
bigWig
84
bam
34
bed narrowPeak
21
fastq
12
tsv
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
hdf5
2
csv
2
hic
2
tagAlign
1
bedpe bed3+
1
tar
Organism
210
Homo sapiens
Biosample type
822
tissue
210
primary cell
191
cell line
129
in vitro differentiated cells
5
stem cell
Organ
37
epithelium
13
vasculature
12
pancreas
11
blood vessel
10
vein
8
kidney
5
connective tissue
4
brain
3
heart
3
musculature of body
2
eye
2
liver
Project
314
HPAP
210
AMP
24
T1D
Genome assembly (visualization)
441
hg19
GRCh38
Lab
175
AMP-T2D consortium
35
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
1
audit script error
assembly!
GRCh38
files.file_type!
hdf5
organ_slims!
small intestine
BIOSAMPLE
ASSAY
210 results
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ATAC-seq
ChIP-seq
RRBS
total RNA-seq
DNase-seq
Hi-C
single cell RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
CD8-positive, alpha-beta T cell
2
33
2
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
endothelial cell of umbilical vein
7
2
1
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