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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
128
total RNA-seq
118
single cell RNA-seq
91
ATAC-seq
87
RNA microarray
23
pCHi-C
12
Hi-C
8
snATAC-seq
7
WGBS
5
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
1
DNase-seq
Assay category
317
DNA binding
246
Transcription
102
DNA accessibility
12
3D chromatin structure
12
DNA methylation
Target of assay
184
control
134
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
165
August, 2021
126
August, 2017
93
February, 2021
81
October, 2019
66
May, 2022
42
February, 2023
31
May, 2020
29
October, 2018
28
March, 2020
25
February, 2020
25
November, 2017
23
May, 2019
16
April, 2019
July, 2019
12
December, 2017
9
October, 2017
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
2
January, 2018
1
August, 2022
1
January, 2019
1
May, 2021
1
November, 2019
Available data
201
bam
158
tsv
157
txt
122
tagAlign
99
bed narrowPeak
97
fastq
58
bigWig
22
bed broadPeak
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
4
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3+
1
bedpe
Organism
804
Homo sapiens
Biosample type
806
tissue
201
primary cell
191
cell line
129
in vitro differentiated cells
5
stem cell
Organ
122
liver
119
heart
92
bone element
89
pancreas
85
kidney
67
connective tissue
66
adipose tissue
60
brain
53
eye
36
musculature of body
27
blood vessel
27
vasculature
22
limb
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pituitary gland
1
skin of body
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
806
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
1693
hg19
Lab
665
AMP-T2D consortium
67
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
25
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
month_released!
July, 2019
organ_slims!
small intestine
BIOSAMPLE
ASSAY
806 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
RNA microarray
pCHi-C
Hi-C
snATAC-seq
WGBS
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
DNase-seq
tissue
islet of Langerhans
46
25
35
4
3
1
4
1
liver
70
20
1
20
1
1
3
1
bone element
84
kidney
7
49
17
1
6
subcutaneous abdominal adipose tissue
36
3
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