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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 587ChIP-seq
  • 242ATAC-seq
  • 111single cell RNA-seq
  • 92total RNA-seq
  • 87RNA microarray
  • 40pCHi-C
  • 25Hi-C
  • 21RRBS
  • 11WGBS
  • 10MeRIP-seq
  • 5DNase-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
Assay category
  • 587DNA binding
  • 254DNA accessibility
  • 203Transcription
  • 33DNA methylation
  • 253D chromatin structure
Target of assay
  • 327control
  • 210histone
  • 210histone modification
  • 108broad histone mark
  • 102narrow histone mark
  • 55transcription factor
  • 13RNA binding protein
  • 5nucleotide modification
  • 2chromatin remodeller
  • 1recombinant protein
Date released
  • 162August, 2017
  • 134May, 2020
  • 126November, 2017
  • 110August, 2021
  • 107October, 2019
  • 106May, 2021
  • 102February, 2021
  • 68February, 2023
  • 66May, 2022
  • 46March, 2020
  • 29July, 2019
  • 29October, 2018
  • 25February, 2020
  • 24May, 2019
  • 17December, 2017
  • 16April, 2019
  • 10November, 2020
  • 9November, 2018
  • 9October, 2017
  • 8February, 2018
  • 8January, 2018
  • 8June, 2019
  • 5December, 2018
  • 5December, 2019
  • 4January, 2019
  • 4July, 2018
  • 4November, 2019
  • 4September, 2017
  • 2March, 2019
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
  • 1September, 2018
Available data
  • 433bam
  • 248fastq
  • 220bigWig
  • 184tsv
  • 167bed narrowPeak
  • 152tagAlign
  • 101txt
  • 44bigBed narrowPeak
  • 40bed broadPeak
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 18bedpe bed3+
  • 18bigBed broadPeak
  • 16hic
  • 13bed bed3+
  • 10bed bed3
  • 8csv
  • 4bed bedgraph
  • 4hdf5
  • 4tar
  • 2ibed
Organism
  • 1247Homo sapiens
Biosample type
  • 753tissue
  • 214primary cell
  • 157cell line
  • 122in vitro differentiated cells
  • 5stem cell
Organ
  • 229liver
  • 138pancreas
  • 127heart
  • 113connective tissue
  • 92bone element
  • 88epithelium
  • 69brain
  • 67adipose tissue
  • 55eye
  • 45vasculature
  • 43blood vessel
  • 43musculature of body
  • 33kidney
  • 26limb
  • 13artery
  • 12nerve
  • 10vein
  • 9spleen
  • 8embryo
  • 8skeleton
  • 7blood
  • 7bodily fluid
  • 5gonad
  • 5ovary
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1251AMP
Genome assembly (visualization)
  • 2998hg19
  • GRCh38
  • 5hg18
Lab
  • 1092AMP-T2D consortium
  • 107Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 154inconsistent ontology term
  • 12audit script error
Audit category:
  • 10missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 2inconsistent control run_type
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

1251 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
DNase-seq
FAIRE-seq
GRO-seq
snDrop-seq
Capture-C
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
tissue
islet of Langerhans463524411411
liver70201201113
bone element84
subcutaneous abdominal adipose tissue363
heart left ventricle7181112
primary cell
CD8-positive, alpha-beta T cell3322
naive thymus-derived CD4-positive, alpha-beta T cell2221
CD4-positive, alpha-beta memory T cell22
macrophage11
endothelial cell of umbilical vein721
cell line
HepG29921
EndoC_BH12181621
GM1287861
Panc17
RCC 7860 vector11
in vitro differentiated cells
embryonic stem cell38551
adipocyte1971
neural progenitor cell8
cardiomyocytes (cardiac muscle cell)222
pancreatic endoderm51
stem cell
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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