Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 117ChIP-seq
  • 9total RNA-seq
  • 2Hi-C
  • 2STARR-seq
  • 2pCHi-C
  • 1whole genome sequencing assay
Assay category
  • 117DNA binding
  • 9Transcription
  • 23D chromatin structure
  • 1DNA sequencing
Target of assay
  • 60control
  • 52transcription factor
  • 7RNA binding protein
  • 5histone
  • 5histone modification
  • 3narrow histone mark
  • 2broad histone mark
  • 2chromatin remodeller
  • 1recombinant protein
Date released
  • 98November, 2017
  • 31August, 2021
  • 1December, 2018
  • 1February, 2021
  • 1May, 2020
  • 1November, 2018
Available data
  • 100fastq
  • 98bam
  • 65bigWig
  • 46bed narrowPeak
  • 32bigBed narrowPeak
  • 14bed broadPeak
  • 14bigBed broadPeak
  • 10tsv
  • 3tagAlign
  • 3tar
  • 1bed bed3+
  • 1bedpe bed3+
  • 1hic
  • 1vcf
Organism
  • 133Homo sapiens
Biosample type
  • 133cell line
Organ
  • 133liver
Project
  • 133AMP
Genome assembly (visualization)
  • 330hg19
  • GRCh38
Lab
  • 102AMP-T2D consortium
  • 31Bing Ren, UCSD
Audit category:
  • 8missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 2inconsistent control run_type
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

133 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
whole genome sequencing assay
cell line
HepG211792221
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego