Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ATAC-seq
46
ChIP-seq
32
total RNA-seq
7
snATAC-seq
4
MeRIP-seq
4
pCHi-C
3
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
54
DNA accessibility
46
DNA binding
32
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
35
histone
35
histone modification
27
narrow histone mark
13
control
8
broad histone mark
2
nucleotide modification
Date released
52
October, 2019
24
May, 2022
22
August, 2017
18
February, 2023
4
January, 2021
4
July, 2018
4
March, 2020
4
November, 2020
4
September, 2017
3
March, 2019
2
August, 2021
1
August, 2022
1
July, 2019
1
November, 2019
Available data
31
bam
31
fastq
25
bed narrowPeak
9
bigWig
9
tagAlign
7
bed broadPeak
6
txt
2
bedpe bed3+
2
hic
2
tsv
1
bed bedMethyl
1
bedpe
1
bigBed bedMethyl
1
bigBed narrowPeak
Organism
144
Homo sapiens
Biosample type
144
tissue
Organ
95
pancreas
21
eye
4
gonad
4
ovary
1
brain
1
connective tissue
1
limb
1
lymph node
1
pituitary gland
1
skin of body
Project
120
AMP
24
T1D
Genome assembly (visualization)
344
hg19
GRCh38
Lab
89
AMP-T2D consortium
46
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
144 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
MeRIP-seq
pCHi-C
Hi-C
FAIRE-seq
RRBS
tissue
islet of Langerhans
46
46
32
7
4
4
3
1
1
Download