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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 46ATAC-seq
  • 46ChIP-seq
  • 32total RNA-seq
  • 7snATAC-seq
  • 4MeRIP-seq
  • 4pCHi-C
  • 3Hi-C
  • 1FAIRE-seq
  • 1RRBS
Assay category
  • 54DNA accessibility
  • 46DNA binding
  • 32Transcription
  • 33D chromatin structure
  • 1DNA methylation
Target of assay
  • 35histone
  • 35histone modification
  • 27narrow histone mark
  • 13control
  • 8broad histone mark
  • 2nucleotide modification
Date released
  • 52October, 2019
  • 24May, 2022
  • 22August, 2017
  • 18February, 2023
  • 4January, 2021
  • 4July, 2018
  • 4March, 2020
  • 4November, 2020
  • 4September, 2017
  • 3March, 2019
  • 2August, 2021
  • 1August, 2022
  • 1July, 2019
  • 1November, 2019
Available data
  • 31bam
  • 31fastq
  • 25bed narrowPeak
  • 9bigWig
  • 9tagAlign
  • 7bed broadPeak
  • 6txt
  • 2bedpe bed3+
  • 2hic
  • 2tsv
  • 1bed bedMethyl
  • 1bedpe
  • 1bigBed bedMethyl
  • 1bigBed narrowPeak
Organism
  • 144Homo sapiens
Biosample type
  • 144tissue
Organ
  • 95pancreas
  • 21eye
  • 4gonad
  • 4ovary
  • 1brain
  • 1connective tissue
  • 1limb
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 120AMP
  • 24T1D
Genome assembly (visualization)
  • 344hg19
  • GRCh38
Lab
  • 89AMP-T2D consortium
  • 46Kyle Gaulton, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 3Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 1audit script error
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

144 results

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ATAC-seq
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total RNA-seq
snATAC-seq
MeRIP-seq
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FAIRE-seq
RRBS
tissue
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