Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
6
WGBS
6
pCHi-C
2
single cell RNA-seq
Assay category
12
DNA accessibility
6
DNA methylation
2
Transcription
Date released
12
February, 2023
6
February, 2021
6
March, 2020
2
December, 2019
Available data
204
fastq
153
zippedFastqFolder
111
bigWig
110
bam
38
bed narrowPeak
26
tsv
24
tagAlign
13
bed bed3+
11
bedpe bed3+
10
bed bedMethyl
10
bigBed bedMethyl
9
hic
7
bed bedgraph
6
bigBed narrowPeak
5
bed bed3
4
bed broadPeak
4
bigBed broadPeak
4
hdf5
3
cool
3
txt
2
csv
2
ibed
1
tar
Organism
26
Homo sapiens
Biosample type
tissue
18
primary cell
cell line
4
in vitro differentiated cells
4
stem cell
Organ
6
epithelium
6
pancreas
1
connective tissue
Project
20
AMP
6
HPAP
Genome assembly (visualization)
GRCh38
379
hg19
Lab
20
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
2
audit script error
assembly!
GRCh38
biosample_type!
cell line
tissue
BIOSAMPLE
ASSAY
26 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
primary cell
pancreatic alpha cell
6
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
Download