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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ATAC-seq
62
ChIP-seq
4
FAIRE-seq
2
DNase-seq
Assay category
76
DNA accessibility
62
DNA binding
Target of assay
61
histone
61
histone modification
32
broad histone mark
29
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
38
May, 2022
30
February, 2023
30
May, 2021
24
August, 2017
8
May, 2020
2
August, 2021
2
July, 2019
1
April, 2019
1
May, 2019
1
November, 2017
1
November, 2018
October, 2019
Available data
301
fastq
278
bam
185
tsv
165
bigWig
160
txt
153
zippedFastqFolder
138
bed narrowPeak
137
tagAlign
24
bed broadPeak
18
bed bedMethyl
18
bedpe bed3+
18
bigBed bedMethyl
16
hic
14
bed bed3+
10
bed bed3
8
bigBed narrowPeak
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
bigBed broadPeak
2
ibed
1
bedpe
Organism
138
Homo sapiens
Biosample type
101
tissue
cell line
33
primary cell
4
in vitro differentiated cells
Organ
28
liver
27
eye
26
pancreas
14
musculature of body
12
epithelium
4
connective tissue
2
adipose tissue
2
brain
1
heart
1
kidney
1
limb
Project
138
AMP
Genome assembly (visualization)
GRCh38
1024
hg19
Lab
66
AMP-T2D consortium
48
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assembly!
GRCh38
biosample_type!
cell line
month_released!
October, 2019
organ_slims!
pericardium
BIOSAMPLE
ASSAY
138 results
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ATAC-seq
ChIP-seq
FAIRE-seq
DNase-seq
tissue
liver
20
8
islet of Langerhans
18
6
1
retina
15
skeletal muscle tissue
13
pigmented layer of retina
12
+ See 8 more…
primary cell
CD8-positive, alpha-beta T cell
30
skeletal muscle myoblast
1
2
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
See all biosamples
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