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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
30
ATAC-seq
2
total RNA-seq
Assay category
33
DNA binding
30
DNA accessibility
2
Transcription
Target of assay
30
histone
30
histone modification
20
broad histone mark
10
narrow histone mark
3
control
Date released
40
May, 2021
20
May, 2022
3
February, 2023
2
August, 2021
Available data
184
fastq
153
zippedFastqFolder
72
bed narrowPeak
66
txt
65
bigWig
25
bam
7
tsv
5
hic
4
bed bed3+
4
bedpe bed3+
3
bed bedgraph
3
cool
1
bed broadPeak
bedpe
Organism
65
Homo sapiens
Biosample type
35
primary cell
20
tissue
cell line
10
in vitro differentiated cells
Organ
20
liver
2
connective tissue
Project
65
AMP
Genome assembly (visualization)
246
hg19
GRCh38
Lab
AMP-T2D consortium
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assembly!
GRCh38
biosample_type!
cell line
files.file_type!
bedpe
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
ATAC-seq
total RNA-seq
primary cell
CD8-positive, alpha-beta T cell
33
2
tissue
liver
20
in vitro differentiated cells
embryonic stem cell
6
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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