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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
21
total RNA-seq
20
ATAC-seq
4
WGBS
2
Hi-C
2
RRBS
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
75
DNA binding
22
Transcription
21
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
47
control
28
histone
28
histone modification
16
narrow histone mark
12
broad histone mark
Date released
40
May, 2022
35
August, 2017
31
May, 2020
13
December, 2017
3
July, 2019
2
March, 2020
1
August, 2021
1
February, 2020
1
February, 2021
Available data
52
bam
52
tagAlign
29
bigWig
28
bed narrowPeak
22
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3+
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
127
Homo sapiens
Biosample type
cell line
123
tissue
3
primary cell
1
in vitro differentiated cells
Organ
274
pancreas
200
epithelium
142
kidney
127
liver
125
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
43
musculature of body
43
vasculature
41
blood vessel
26
limb
20
lung
12
nerve
11
artery
10
vein
9
spleen
8
blood
8
bodily fluid
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
127
AMP
Genome assembly (visualization)
295
hg19
GRCh38
Lab
87
AMP-T2D consortium
40
Karen Mohlke, UNC
assembly!
GRCh38
biosample_type!
cell line
organ_slims!
mammary gland
stomach
BIOSAMPLE
ASSAY
127 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
RRBS
DNase-seq
pCHi-C
single cell RNA-seq
tissue
liver
70
20
20
3
1
1
1
1
right lobe of liver
3
1
1
1
primary cell
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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