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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 467ChIP-seq
  • 278ATAC-seq
  • 263single cell RNA-seq
  • 241total RNA-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 58WGBS
  • 51pCHi-C
  • 29Hi-C
  • 21RRBS
  • 5DNase-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2Capture-C
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
Assay category
  • 506Transcription
  • 467DNA binding
  • 372DNA accessibility
  • 80DNA methylation
  • 293D chromatin structure
Target of assay
  • 248control
  • 207histone
  • 207histone modification
  • 106broad histone mark
  • 101narrow histone mark
  • 14transcription factor
  • 7RNA binding protein
  • 2nucleotide modification
Date released
  • 200May, 2022
  • 178August, 2021
  • 164February, 2023
  • 162August, 2017
  • 143February, 2021
  • 133May, 2020
  • 107May, 2021
  • 97October, 2019
  • 56September, 2020
  • 47September, 2023
  • 42March, 2020
  • 29July, 2019
  • 29October, 2018
  • 28November, 2017
  • 25February, 2020
  • 24May, 2019
  • 19April, 2020
  • 17December, 2017
  • 16April, 2019
  • 16January, 2021
  • 9October, 2017
  • 8February, 2018
  • 8June, 2019
  • 7January, 2018
  • 5December, 2019
  • 5November, 2018
  • 4December, 2018
  • 4July, 2018
  • 4November, 2020
  • 4September, 2017
  • 3March, 2019
  • 3May, 2023
  • 3October, 2022
  • 2March, 2023
  • 1August, 2018
  • 1August, 2022
  • 1January, 2019
  • 1November, 2019
  • 1September, 2018
Available data
  • 314bam
  • 301fastq
  • 185tsv
  • 171bigWig
  • 160txt
  • 153zippedFastqFolder
  • 146tagAlign
  • 139bed narrowPeak
  • 26bed broadPeak
  • 21bedpe bed3+
  • 20hic
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 14bed bed3+
  • 12bigBed narrowPeak
  • 10bed bed3
  • 8csv
  • 7bed bedgraph
  • 4bigBed broadPeak
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
Organism
  • 1601Homo sapiens
Biosample type
  • 918tissue
  • 552primary cell
  • cell line
  • 129in vitro differentiated cells
  • 7stem cell
Organ
  • 274pancreas
  • 200epithelium
  • 142kidney
  • 127liver
  • 125heart
  • 118connective tissue
  • 93bone element
  • 69brain
  • 67adipose tissue
  • 55eye
  • 43musculature of body
  • 43vasculature
  • 41blood vessel
  • 26limb
  • 20lung
  • 12nerve
  • 11artery
  • 10vein
  • 9spleen
  • 8blood
  • 8bodily fluid
  • 8embryo
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 1171AMP
  • 314HPAP
  • 53T1D
  • 47KPMP
  • 19LungMap
  • 2community
Genome assembly (visualization)
  • 2683hg19
  • GRCh38
  • 5hg18
Lab
  • 943AMP-T2D consortium
  • 314Klaus Kaestner, Upenn
  • 158Kyle Gaulton, UCSD
  • 67Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 3Bing Ren, UCSD
  • 2Anna Gloyn, Oxford
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 122inconsistent ontology term
  • 42audit script error
Audit category:
  • 2missing controlled_by
assembly!
  • GRCh38
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

1606 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
tissue
islet of Langerhans464632743114
kidney764496111
liver70201203111
bone element84
subcutaneous abdominal adipose tissue363
primary cell
Langerhans cell8548
pancreatic alpha cell62242311
pancreatic beta cell61311161
exocrine cell39
CD8-positive, alpha-beta T cell33221
in vitro differentiated cells
embryonic stem cell38651
adipocyte19811
neural progenitor cell8
cardiomyocytes (cardiac muscle cell)222
pancreatic endoderm51
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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