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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
ChIP-seq
27
snATAC-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
27
DNA accessibility
27
DNA binding
18
Transcription
6
DNA methylation
Target of assay
26
control
1
histone
1
histone modification
1
narrow histone mark
Date released
202
August, 2021
200
May, 2022
154
February, 2023
143
August, 2017
143
February, 2021
134
May, 2020
126
November, 2017
103
October, 2019
75
May, 2021
56
September, 2020
47
September, 2023
42
March, 2020
29
October, 2018
25
February, 2020
25
July, 2019
24
May, 2019
19
April, 2020
16
April, 2019
16
January, 2021
12
December, 2017
10
November, 2020
9
November, 2018
9
October, 2017
8
June, 2019
5
December, 2018
4
January, 2018
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
1
August, 2022
1
September, 2018
Available data
89
txt
45
fastq
28
bam
14
tsv
6
csv
3
tagAlign
2
bed bed3+
1
bed narrowPeak
1
bigBed narrowPeak
1
bigWig
Organism
167
Homo sapiens
Biosample type
116
tissue
47
primary cell
4
cell line
in vitro differentiated cells
Organ
84
bone element
13
blood vessel
13
vasculature
9
kidney
8
heart
7
epithelium
7
pancreas
4
artery
3
brain
2
limb
2
liver
2
musculature of body
1
connective tissue
Project
122
AMP
45
HPAP
Genome assembly (visualization)
645
hg19
GRCh38
Lab
122
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
85
inconsistent ontology term
32
audit script error
assembly!
GRCh38
biosample_type!
in vitro differentiated cells
files.file_type!
hdf5
BIOSAMPLE
ASSAY
167 results
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Clear Filters
RNA microarray
ChIP-seq
snATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
thoracic aorta
4
ascending aorta
3
right atrium auricular region
3
+ See 12 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
kidney epithelial cell
1
osteoblast
1
cell line
smooth muscle cell of the coronary artery
2
HepG2
1
iPSC derived cell line
1
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