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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
14
ATAC-seq
14
total RNA-seq
4
pCHi-C
2
Hi-C
1
FAIRE-seq
Assay category
60
DNA binding
15
DNA accessibility
14
Transcription
2
3D chromatin structure
Target of assay
33
control
27
histone
27
histone modification
22
narrow histone mark
5
broad histone mark
Date released
200
May, 2022
154
February, 2023
143
August, 2017
136
August, 2021
135
February, 2021
134
May, 2020
126
November, 2017
95
October, 2019
75
May, 2021
56
September, 2020
40
March, 2020
29
October, 2018
25
February, 2020
24
July, 2019
23
May, 2019
19
April, 2020
16
January, 2021
12
December, 2017
11
April, 2019
10
November, 2020
9
November, 2018
9
October, 2017
7
June, 2019
5
December, 2018
4
January, 2018
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
1
August, 2022
1
September, 2018
Available data
40
bam
9
tagAlign
4
bigWig
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
2
hic
1
bed narrowPeak
1
bedpe bed3+
1
tar
Organism
95
Homo sapiens
Biosample type
79
tissue
9
primary cell
7
cell line
in vitro differentiated cells
Organ
21
eye
17
limb
14
blood vessel
14
vasculature
12
epithelium
11
nerve
10
pancreas
9
vein
8
brain
kidney
5
artery
4
gonad
4
ovary
2
connective tissue
1
adipose tissue
1
heart
1
lymph node
1
pituitary gland
1
skin of body
Project
95
AMP
Genome assembly (visualization)
187
hg19
GRCh38
Lab
95
AMP-T2D consortium
Audit category:
1
audit script error
assembly!
GRCh38
biosample_type!
in vitro differentiated cells
files.file_type!
xls
organ_slims!
kidney
BIOSAMPLE
ASSAY
95 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
Hi-C
FAIRE-seq
tissue
islet of Langerhans
21
13
14
4
tibial nerve
11
tibial artery
5
adipose tissue
1
central medial thalamic nucleus
1
+ See 9 more…
primary cell
endothelial cell of umbilical vein
7
1
1
cell line
Panc1
7
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