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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
66
ATAC-seq
5
FAIRE-seq
2
DNase-seq
Assay category
108
DNA binding
73
DNA accessibility
Target of assay
64
histone
64
histone modification
44
transcription factor
33
broad histone mark
31
narrow histone mark
6
RNA binding protein
2
chromatin remodeller
Date released
38
May, 2022
33
November, 2017
30
May, 2021
28
February, 2023
24
August, 2017
14
August, 2021
8
May, 2020
2
July, 2019
1
April, 2019
1
May, 2019
1
November, 2018
1
October, 2019
Available data
407
bam
384
fastq
223
bigWig
196
tsv
181
bed narrowPeak
158
txt
153
zippedFastqFolder
130
tagAlign
42
bigBed narrowPeak
40
bed broadPeak
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
18
hic
bedpe bed3+
9
bed bed3+
8
csv
5
bed bed3
4
hdf5
4
tar
3
cool
1
bedpe
1
vcf
Organism
181
Homo sapiens
Biosample type
101
tissue
46
cell line
34
primary cell
in vitro differentiated cells
Organ
74
liver
27
eye
26
pancreas
14
musculature of body
13
epithelium
2
adipose tissue
2
brain
2
connective tissue
1
blood vessel
1
heart
1
kidney
1
limb
1
vasculature
1
vein
Project
181
AMP
Genome assembly (visualization)
GRCh38
1467
hg19
Lab
99
AMP-T2D consortium
48
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
biosample_type!
in vitro differentiated cells
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
181 results
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ChIP-seq
ATAC-seq
FAIRE-seq
DNase-seq
tissue
liver
8
20
islet of Langerhans
6
18
1
retina
15
skeletal muscle tissue
13
pigmented layer of retina
12
+ See 8 more…
cell line
HepG2
46
primary cell
CD8-positive, alpha-beta T cell
30
skeletal muscle myoblast
1
2
endothelial cell of umbilical vein
1
See all biosamples
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