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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ATAC-seq
35
ChIP-seq
4
Hi-C
2
total RNA-seq
1
GRO-seq
Assay category
72
DNA accessibility
35
DNA binding
4
3D chromatin structure
2
Transcription
Target of assay
histone
67
histone modification
36
broad histone mark
31
narrow histone mark
20
control
15
transcription factor
1
RNA binding protein
Date released
45
May, 2020
20
May, 2022
20
November, 2017
11
August, 2021
5
May, 2021
4
January, 2018
4
July, 2019
4
March, 2020
1
August, 2017
Available data
390
bam
381
fastq
196
tsv
158
txt
155
bigWig
153
zippedFastqFolder
117
bed narrowPeak
58
tagAlign
bigBed narrowPeak
19
bed bedMethyl
19
bigBed bedMethyl
18
hic
16
bedpe bed3+
15
bed broadPeak
14
bigBed broadPeak
9
bed bed3+
8
csv
5
bed bed3
4
hdf5
4
tar
3
cool
1
bedpe
1
vcf
Organism
114
Homo sapiens
Biosample type
58
primary cell
31
cell line
24
tissue
in vitro differentiated cells
1
stem cell
Organ
49
liver
6
brain
6
epithelium
4
pancreas
4
vasculature
3
blood vessel
2
connective tissue
1
adipose tissue
1
blood
1
bodily fluid
1
musculature of body
Project
114
AMP
Genome assembly (visualization)
1439
hg19
GRCh38
1
hg18
Lab
78
AMP-T2D consortium
20
Karen Mohlke, UNC
11
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
assembly!
GRCh38
biosample_type!
in vitro differentiated cells
files.file_type!
bigBed narrowPeak
target.investigated_as!
histone
BIOSAMPLE
ASSAY
114 results
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ATAC-seq
ChIP-seq
Hi-C
total RNA-seq
GRO-seq
primary cell
CD8-positive, alpha-beta T cell
2
3
2
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
+ See 26 more…
cell line
HepG2
28
EndoC_BH1
2
GM12878
1
tissue
liver
20
islet of Langerhans
2
adipose tissue
1
skeletal muscle tissue
1
stem cell
hESC
1
See all biosamples
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