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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
59
total RNA-seq
19
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
19
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
5
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
202
August, 2021
200
May, 2022
154
February, 2023
143
August, 2017
143
February, 2021
134
May, 2020
126
November, 2017
103
October, 2019
75
May, 2021
56
September, 2020
47
September, 2023
42
March, 2020
29
July, 2019
29
October, 2018
25
February, 2020
24
May, 2019
19
April, 2020
16
April, 2019
16
January, 2021
12
December, 2017
10
November, 2020
9
November, 2018
9
October, 2017
8
June, 2019
5
December, 2018
4
January, 2018
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
December, 2019
3
March, 2019
May, 2023
1
August, 2022
1
September, 2018
Available data
108
tsv
57
txt
14
bed narrowPeak
14
bigWig
2
bedpe bed3+
2
hic
1
bam
1
tagAlign
1
vcf
Organism
201
Homo sapiens
Biosample type
165
tissue
36
cell line
in vitro differentiated cells
1
primary cell
Organ
92
heart
66
kidney
32
liver
6
blood vessel
6
vasculature
4
pancreas
3
epithelium
2
artery
1
adipose tissue
1
connective tissue
Project
202
AMP
Genome assembly (visualization)
GRCh38
27
hg19
Lab
102
AMP-T2D consortium
64
Katalin Susztak, Upenn
36
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assembly!
GRCh38
biosample_type!
in vitro differentiated cells
month_released!
August, 2018
May, 2023
BIOSAMPLE
ASSAY
202 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
1
See all biosamples
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