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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
14
total RNA-seq
5
ATAC-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
1
FAIRE-seq
1
RNA microarray
Assay category
102
DNA binding
14
Transcription
6
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Target of assay
52
control
50
histone
50
histone modification
29
broad histone mark
21
narrow histone mark
Date released
41
August, 2017
28
November, 2017
18
October, 2018
14
February, 2020
9
October, 2017
9
October, 2019
6
July, 2019
3
March, 2020
3
May, 2019
2
February, 2023
1
August, 2021
1
January, 2018
Available data
47
bam
44
tagAlign
26
fastq
17
tsv
11
bigWig
4
bed narrowPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bed bed3
Organism
134
Homo sapiens
Biosample type
128
tissue
7
primary cell
in vitro differentiated cells
Organ
310
pancreas
259
liver
226
epithelium
149
kidney
127
heart
93
bone element
75
connective tissue
69
brain
66
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
135
AMP
Genome assembly (visualization)
GRCh38
590
hg19
Lab
135
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
GRCh38
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
135 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
RRBS
FAIRE-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
10
1
1
brain
9
1
1
omental fat pad
8
1
cingulate gyrus
8
+ See 24 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
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