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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
4
WGBS
3
ATAC-seq
2
total RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
56
DNA binding
4
DNA methylation
3
DNA accessibility
2
Transcription
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
12
narrow histone mark
Date released
41
August, 2017
18
October, 2018
2
February, 2020
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
Available data
20
fastq
19
bam
8
tagAlign
3
bigWig
3
tsv
2
bed narrowPeak
1
bed broadPeak
1
bigBed narrowPeak
Organism
66
Homo sapiens
Biosample type
67
tissue
in vitro differentiated cells
Organ
310
pancreas
259
liver
226
epithelium
149
kidney
127
heart
93
bone element
75
connective tissue
69
brain
66
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
67
AMP
Genome assembly (visualization)
426
hg19
GRCh38
Lab
67
AMP-T2D consortium
assembly!
GRCh38
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
67 results
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ChIP-seq
WGBS
ATAC-seq
total RNA-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
3
1
islet of Langerhans
1
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