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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
ChIP-seq
Assay category
174
DNA binding
Target of assay
281
control
174
histone
174
histone modification
91
narrow histone mark
83
broad histone mark
65
transcription factor
13
RNA binding protein
5
nucleotide modification
2
chromatin remodeller
1
recombinant protein
Date released
96
August, 2017
22
October, 2019
20
May, 2021
15
November, 2017
8
May, 2020
6
October, 2017
4
August, 2021
1
April, 2019
1
December, 2017
1
May, 2019
Available data
84
tagAlign
36
bigWig
34
bed narrowPeak
23
bed broadPeak
13
bam
4
fastq
2
bigBed broadPeak
1
bigBed narrowPeak
Organism
174
Homo sapiens
Biosample type
134
tissue
34
in vitro differentiated cells
primary cell
6
cell line
Organ
44
connective tissue
33
liver
31
adipose tissue
20
musculature of body
19
brain
15
pancreas
4
gonad
4
ovary
2
eye
2
limb
1
embryo
1
heart
1
lymph node
Project
174
AMP
Genome assembly (visualization)
GRCh38
477
hg19
Lab
151
AMP-T2D consortium
20
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent control read length
assembly!
GRCh38
biosample_type!
primary cell
files.file_type!
bed bed3+
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
174 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
35
subcutaneous abdominal adipose tissue
31
liver
28
skeletal muscle tissue
19
brain
6
+ See 7 more…
in vitro differentiated cells
embryonic stem cell
20
adipocyte
12
neural progenitor cell
1
pancreatic endoderm
1
cell line
HepG2
5
Panc1
1
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