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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ATAC-seq
49
ChIP-seq
20
total RNA-seq
11
snATAC-seq
10
MeRIP-seq
5
Hi-C
2
Capture-C
2
FAIRE-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
67
DNA accessibility
49
DNA binding
20
Transcription
5
3D chromatin structure
Target of assay
39
control
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
5
nucleotide modification
Date released
24
August, 2017
24
May, 2022
19
February, 2023
18
May, 2021
11
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
8
March, 2020
4
August, 2021
4
July, 2018
4
November, 2019
4
September, 2017
3
March, 2019
1
August, 2022
1
February, 2020
1
May, 2019
1
November, 2018
Available data
56
bam
43
fastq
26
bed narrowPeak
12
bigWig
11
tagAlign
7
bed broadPeak
6
txt
5
tsv
4
bedpe bed3+
4
hic
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe
Organism
153
Homo sapiens
Biosample type
primary cell
117
tissue
37
cell line
1
in vitro differentiated cells
Organ
256
liver
155
pancreas
140
kidney
123
heart
107
connective tissue
92
bone element
67
adipose tissue
61
brain
53
eye
49
epithelium
38
musculature of body
30
blood vessel
30
vasculature
26
limb
20
lung
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
127
AMP
28
T1D
Genome assembly (visualization)
471
hg19
GRCh38
Lab
89
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
29
inconsistent ontology term
1
audit script error
assembly!
GRCh38
biosample_type!
primary cell
files.file_type!
bed bedMethyl
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
155 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
FAIRE-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans
36
25
18
7
4
3
1
pancreas
3
1
4
1
1
1
body of pancreas
9
1
endocrine pancreas
2
cell line
EndoC_BH1
18
2
6
1
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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