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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ChIP-seq
19
ATAC-seq
9
RRBS
6
total RNA-seq
5
GRO-seq
2
FAIRE-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
188
DNA binding
21
DNA accessibility
11
DNA methylation
6
Transcription
1
3D chromatin structure
Target of assay
143
control
41
transcription factor
6
RNA binding protein
4
histone
4
histone modification
2
broad histone mark
2
chromatin remodeller
2
narrow histone mark
1
recombinant protein
Date released
98
November, 2017
27
October, 2018
24
May, 2022
22
August, 2017
17
December, 2017
8
February, 2018
8
November, 2018
6
July, 2019
5
December, 2018
5
January, 2018
4
January, 2019
4
September, 2017
3
October, 2017
1
August, 2018
1
March, 2019
Available data
330
bam
227
fastq
172
tsv
161
txt
151
bed narrowPeak
148
tagAlign
145
bigWig
40
bigBed narrowPeak
36
bed broadPeak
18
bedpe bed3+
16
hic
14
bigBed broadPeak
10
bed bed3
9
bed bedMethyl
9
bigBed bedMethyl
8
bed bed3+
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
vcf
Organism
232
Homo sapiens
Biosample type
primary cell
106
cell line
103
tissue
23
in vitro differentiated cells
1
stem cell
Organ
122
liver
45
pancreas
26
connective tissue
21
adipose tissue
8
embryo
8
spleen
6
blood
6
bodily fluid
4
brain
3
epithelium
2
musculature of body
1
heart
1
kidney
1
pericardium
Project
233
AMP
Genome assembly (visualization)
788
hg19
GRCh38
5
hg18
Lab
208
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
2
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
biosample_type!
primary cell
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
233 results
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ChIP-seq
ATAC-seq
RRBS
total RNA-seq
GRO-seq
FAIRE-seq
WGBS
Hi-C
pCHi-C
cell line
HepG2
99
1
GM12878
6
tissue
islet of Langerhans
5
19
1
6
1
liver
16
1
1
subcutaneous adipose tissue
10
body of pancreas
8
omental fat pad
8
+ See 9 more…
in vitro differentiated cells
pancreatic endoderm
5
1
adipocyte
5
Hepatic endoderm
2
definitive endodermal cell
1
1
primitive gut cell
1
1
+ See 6 more…
stem cell
hESC
1
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