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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
70
ATAC-seq
2
FAIRE-seq
Assay category
77
DNA binding
72
DNA accessibility
Target of assay
43
transcription factor
34
histone
34
histone modification
21
narrow histone mark
13
broad histone mark
5
RNA binding protein
2
chromatin remodeller
Date released
38
May, 2022
33
November, 2017
30
February, 2023
21
August, 2017
16
August, 2021
8
May, 2020
July, 2019
1
April, 2019
1
May, 2019
1
November, 2018
Available data
346
bam
227
fastq
182
tsv
161
txt
150
tagAlign
149
bed narrowPeak
143
bigWig
38
bigBed narrowPeak
36
bed broadPeak
19
bedpe bed3+
17
hic
14
bigBed broadPeak
10
bed bed3
8
bed bed3+
7
bed bedgraph
6
csv
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
ibed
1
bedpe
1
vcf
Organism
149
Homo sapiens
Biosample type
99
tissue
46
cell line
primary cell
4
in vitro differentiated cells
Organ
74
liver
27
eye
26
pancreas
14
musculature of body
12
epithelium
4
connective tissue
2
adipose tissue
1
brain
1
heart
1
limb
Project
149
AMP
Genome assembly (visualization)
GRCh38
1303
hg19
Lab
93
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
biosample_type!
primary cell
month_released!
July, 2019
BIOSAMPLE
ASSAY
149 results
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ChIP-seq
ATAC-seq
FAIRE-seq
tissue
liver
8
20
islet of Langerhans
6
18
1
retina
15
skeletal muscle tissue
13
pigmented layer of retina
12
+ See 6 more…
cell line
HepG2
46
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
See all biosamples
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