Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
49
total RNA-seq
10
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
RRBS
Assay category
113
Transcription
10
DNA binding
7
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
9
control
1
RNA binding protein
1
transcription factor
Date released
66
August, 2021
47
September, 2023
8
February, 2021
5
April, 2019
5
October, 2019
3
December, 2019
3
May, 2023
2
July, 2019
2
March, 2020
Available data
62
txt
12
tsv
11
bam
5
csv
1
bed bedMethyl
1
bed narrowPeak
1
bigBed bedMethyl
1
bigBed narrowPeak
1
bigWig
1
hic
Organism
141
Homo sapiens
Biosample type
134
tissue
primary cell
7
cell line
Organ
254
liver
156
pancreas
141
kidney
121
heart
109
connective tissue
92
bone element
65
adipose tissue
52
eye
50
brain
49
epithelium
38
musculature of body
27
blood vessel
27
vasculature
23
limb
20
lung
11
artery
11
nerve
9
spleen
8
embryo
8
skeleton
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
94
AMP
47
KPMP
Genome assembly (visualization)
GRCh38
104
hg19
Lab
67
Katalin Susztak, Upenn
47
KPMP
25
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
5
inconsistent ontology term
assembly!
GRCh38
biosample_type!
primary cell
month_released!
February, 2020
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
141 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
RRBS
tissue
kidney
64
49
7
6
1
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
+ See 1 more…
cell line
HEK293T
2
RCC 7860 vector
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
See all biosamples
Download