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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
239
ChIP-seq
Assay category
239
DNA binding
Target of assay
299
control
174
histone
174
histone modification
91
narrow histone mark
83
broad histone mark
65
transcription factor
13
RNA binding protein
5
nucleotide modification
2
chromatin remodeller
1
recombinant protein
Date released
96
August, 2017
55
November, 2017
32
May, 2021
22
October, 2019
15
August, 2021
8
May, 2020
6
October, 2017
2
April, 2019
1
December, 2017
1
May, 2019
1
November, 2018
Available data
84
tagAlign
83
bigWig
77
bed narrowPeak
54
bam
45
fastq
35
bed broadPeak
33
bigBed narrowPeak
14
bigBed broadPeak
3
tar
Organism
239
Homo sapiens
Biosample type
135
tissue
58
cell line
46
in vitro differentiated cells
primary cell
Organ
85
liver
44
connective tissue
31
adipose tissue
20
musculature of body
19
brain
15
pancreas
4
gonad
4
ovary
2
eye
2
limb
1
embryo
1
heart
1
kidney
1
lymph node
Project
239
AMP
Genome assembly (visualization)
GRCh38
1030
hg19
Lab
193
AMP-T2D consortium
32
Kyle Gaulton, UCSD
14
Bing Ren, UCSD
Audit category:
10
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
biosample_type!
primary cell
BIOSAMPLE
ASSAY
239 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
35
subcutaneous abdominal adipose tissue
31
liver
28
skeletal muscle tissue
19
brain
6
+ See 8 more…
cell line
HepG2
57
Panc1
1
in vitro differentiated cells
embryonic stem cell
32
adipocyte
12
neural progenitor cell
1
pancreatic endoderm
1
See all biosamples
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