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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
10
RRBS
2
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
33
DNA binding
10
DNA methylation
5
DNA accessibility
Target of assay
33
transcription factor
5
RNA binding protein
2
chromatin remodeller
Date released
32
November, 2017
9
July, 2019
4
August, 2017
3
October, 2019
Available data
310
fastq
229
bam
179
bigWig
153
zippedFastqFolder
84
bed narrowPeak
41
tsv
38
bigBed narrowPeak
30
tagAlign
18
bed broadPeak
18
bigBed broadPeak
14
bed bed3+
13
bedpe bed3+
11
hic
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bedgraph
5
bed bed3
4
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
48
Homo sapiens
Biosample type
32
cell line
tissue
14
primary cell
2
in vitro differentiated cells
Organ
33
liver
7
epithelium
3
connective tissue
3
kidney
2
vasculature
1
blood vessel
1
brain
1
eye
1
heart
1
musculature of body
1
vein
Project
48
AMP
Genome assembly (visualization)
480
hg19
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
biosample_type!
tissue
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
cell line
HepG2
32
primary cell
skeletal muscle myoblast
1
1
2
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
endothelial cell of umbilical vein
1
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in vitro differentiated cells
adipocyte
2
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